FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418782
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33470.7992225071755711No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28850.6889025793849783No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28720.6857983389926023No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23410.5590020583501678No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21350.5098117875171331No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21320.5090954243496616No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17330.4138191230759679No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15560.37155369619515644No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14830.3541221924533528No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14800.35340582928588143No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14790.35316704156339096No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14080.3362131132665683No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12870.30731979884522254No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12190.2910822337158713No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11080.26457679651943017No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10100.24117559971536504No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9540.22780348725589925No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9330.2227889450835996No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8900.2125210730165098No Hit
CGCGCCGAAGTTAGATTTATTTTCGGTACCGTCCAGATCGATCA8750.20893925717915288No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8550.20416350272934367No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8140.19437320610723477No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7350.17550897603048843No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7150.17073322158067922No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6800.16237565129351308No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6720.1604653495135894No Hit
ACCCAGGTCAGTACCGTTGGTGGTGCCGGTCAGCGCAGTGGTGC6660.15903262317864666No Hit
AACGTGACCTTCCTCATCTTTACGCCAGTGCTGCGCCTCATCGA6490.15497323189630882No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6420.1533017178388756No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6350.15163020378144237No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6210.14828717566657593No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5920.14136233171435258No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5840.1394520299344289No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5640.1346762754846197No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4990.11915507352273977No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4910.11724477174281608No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4760.11366295590545916No Hit
CGGTTCATGGATCGGGCTGACGTTAGGGGTAGCAGTGTGGGAGT4580.10936477690063089No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4480.10697689967572627No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4450.1062605365082549No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG4320.1031562961158789No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG4240.10124599433595521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)