FastQCFastQC Report
Wed 31 May 2023
EGAF00007926351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362957
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13150.3623018704695047No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10380.2859842901500729No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9680.2666982590224186No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9500.2617389938753076No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8500.23418752083580152No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC8090.222891416889604No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7670.21131979821301144No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6620.18239075152153011No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6620.18239075152153011No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6510.17936008948718443No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6290.1732987654184931No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4510.1242571434081723No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4440.12232854029540689No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4240.11681824568750569No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC3990.10993037742762918No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG3940.10855280377565386No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3780.1041445680893329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)