FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362957
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50681.396308653642167No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16900.46561989436765233No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16450.45322173149987466No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13660.37635312171965274No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10550.2906680405667889No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10190.2807495102725667No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10170.28019848081177656No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8040.22151384323762868No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7190.19809509115404855No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6950.19148273762456708No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6250.17219670649691288No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5150.1418900861534562No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4620.127287805442518No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4520.12453265813856737No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4410.1215019961042217No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4360.12012442245224642No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4270.11764478987869086No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4110.1132365541923699No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3820.10524662701091314No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT3800.10469559755012302No Hit

[OK]Adapter Content

Adapter graph