FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377956
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47511.2570246272052832No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17330.4585189810454127No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16570.4384108203071257No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14260.37729259490522704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11500.3042682216977638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11190.29606620876504147No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9510.25161659029093336No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8380.2217189302458487No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7420.1963191482606441No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7420.1963191482606441No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7050.1865296489538465No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5390.14260919260443014No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4850.12832181523775255No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4550.12038438336737609No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4500.1190614780556467No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4480.11853231593095494No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4330.11456359999576671No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4300.11376985680872907No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3990.10556784387600673No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT3810.10080538475378087No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3780.10001164156674322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)