FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences579157
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21170.36553128080986674No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11930.2059890496014034No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11760.2030537488107715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9690.16731214506601838No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9110.1572975894273919No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7830.13519650112145756No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6490.11205942430118258No Hit
CTGGTCCATGGTCTCTTTCGGCATTGCGCCGTAAGTGGTCAGGT6310.10895145875816058No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5980.10325352192928688No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG5930.10239019816733633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)