FastQCFastQC Report
Wed 31 May 2023
EGAF00007926362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences577796
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22010.3809302937368898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21970.38023800787821305No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11550.19989754169291585No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11000.19037861113611032No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9950.17220610734584524No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8110.14036095784671407No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7310.12651524067317876No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC6690.11578480986368891No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6690.11578480986368891No Hit
ATGGTTGGTGGTGAAGCCGGCAAAGAAGCGG6660.11526559546968133No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6420.11111188031762076No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC6100.10557359344820663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)