FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510643
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16940.3317386119069487No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA14250.2790599303231416No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14190.2778849411428337No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12330.24146027655328672No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12180.23852280360251682No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10220.20013982371245667No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10050.19681068770158408No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG9900.19387321475081418No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7540.1476569736587009No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7260.14217369081726372No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6980.13669040797582654No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6680.1308154620742867No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6450.1263113368831062No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5640.11044898294894868No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5530.10829483611838407No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA5390.10555319469766548No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT5330.10437820551735752No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5330.10437820551735752No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5220.10222405868679292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)