FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510643
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40620.7954676750684921No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34520.6760104417371823No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15970.31274295349196995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15410.3017763878090956No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC14330.2806265825635522No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13560.2655475547496No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13000.2545809890667257No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12270.24028528737297877No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9930.19446070934096815No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9300.1821233229477345No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6600.12924880983387613No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5860.11475727661007788No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5770.11299479283961593No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5770.11299479283961593No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5520.10809900458833276No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5490.10751150999817875No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5300.10379071092720354No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5260.10300738480699824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)