FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532786
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30660.5754655715427959No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28910.5426193631214034No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20710.38871141508973583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19730.3703175383737561No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19430.36468675978723164No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18300.34347749377798964No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17900.3359697889959571No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17350.32564669492066234No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16080.30180973223770896No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG14420.2706527573922738No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13660.25638811830641195No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11780.22110190583085892No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11550.2167849755811902No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11390.2137818936683772No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11130.208901885560056No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10890.2043972626908365No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10700.200831102919371No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10410.1953880169523974No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10330.19388647599599088No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9820.18431415239889937No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9520.17868337381237495No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8690.1631048863896574No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8160.15315717755346425No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7800.14640024324963494No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6740.12650482557724865No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6520.12237558794713074No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6280.1178709650779112No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6000.11261557173048842No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5940.11148941601318353No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5840.10961248981767538No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5700.10698479314396399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)