FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515491
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27360.5307561140737665No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21500.4170780867173238No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18920.367028716311245No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17650.3423920107237566No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16780.3255148974472881No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15050.2919546607021267No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14510.28147921108224977No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG13220.2564545258792103No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11290.21901449297853892No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10870.21086692105196794No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10640.20640515547313146No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9980.19360182815994847No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9700.1881701135422345No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9610.186424205272255No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9580.18584223584892848No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9570.185648246041153No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9090.176336735267929No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9020.17497880661350051No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7980.15480386660484857No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7730.14995412141046108No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7580.1470442742938286No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7490.1452983660238491No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6280.12182559928301367No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6240.12104964005191167No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6170.11969171139748318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)