FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515491
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40850.7924483647629152No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27540.5342479306137256No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26870.5212506134927671No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19400.376340227084469No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19230.3730424003522855No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18940.36741669592679604No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17990.34898766418812355No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17570.3408400922615526No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16640.32279904013843114No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15990.3101897026330237No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13970.27100376146237276No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG13840.2684818939612913No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11670.2263861056740079No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11580.2246401974040284No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11170.21668661528523292No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10890.2112549006675189No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10860.21067293124419242No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10430.20233136950984593No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9830.19069198104331597No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9760.18933405238888748No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9240.17924658238456154No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9080.17614274546015354No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7940.15402790737374658No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7520.1458803354471756No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6520.12648135466962568No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6190.12007969101303419No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6040.1171698438964017No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5880.1140660069719937No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5690.1103802006242592No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5460.10591843504542271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)