FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537164
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18380.3421673827732312No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16780.31238132116076284No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14000.2606280391090989No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9080.16903589965075844No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8550.15916926674162826No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7910.1472548420966409No Hit
ACGGGTCACCAGGGTACCGGACGCTTTAGTGTACGCTTCGGCGT7110.13236181129040664No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6350.11821343202448413No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5830.1085329620004319No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5620.10462354141379542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)