FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537164
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC19950.37139495573046594No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17490.3255988860012957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16550.3080995748039705No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15730.2928342182275804No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9870.18374276757191474No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.17592392639864174No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8330.15507368326991383No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG7150.13310646283071836No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6260.11653796605878279No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5980.11132540527660081No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5490.10220342390778235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)