FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530587
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23990.452140742234544No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG19570.36883677888828786No Hit
CGGACGGTATTTGGTACCGTTTGCCAGTTTCAGCGGGGTCTTGA17220.324546210140844No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG15200.2864751680685731No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14970.2821403464464829No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14840.2796902298774753No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14210.2678165880430542No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13200.24878106700691877No Hit
TTCCAGAAAGCCGGCAATTGCACCGAAGAAGCCGCGTTCCTTCA12890.24293848134236234No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12460.23483424961410665No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12280.23144178051855777No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10620.20015567663738462No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9620.18130862610655746No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9050.17056580730398596No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8740.16472322163942954No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8540.1609538115332641No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8450.15925757698548965No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8350.15737287193240695No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8210.15473428485809115No Hit
TTTCAGCAGTTTGGCTGGCGGACGGTATTTGGTGCCGTTCGCCA7950.14983405172007608No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7830.1475724056563768No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7250.13664111634849704No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7080.13343711775825642No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7010.13211782422109852No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6950.1309870011892489No Hit
TTCCTTCAGCAGTTTCGCCGGTGGACGATATTTAGTGCCGTTTG6860.12929076664147443No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6850.12910229613616617No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6560.1236366514822263No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6310.11892488884951949No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6240.11760559531236159No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6110.11515547874335406No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5910.11138606863718861No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5890.11100912762657207No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5470.10309336640362467No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5450.10271642539300813No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5380.10139713185585023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)