FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530587
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41490.7819641265240197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23450.44196333494789736No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19990.37675254011123527No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTC17540.3305772663107087No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15490.291940812722513No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15450.2911869307012799No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15320.28873681413227237No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14950.2817634054358663No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14450.2723398801704527No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14340.27026670461206176No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13860.26122012035726466No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12930.24369236336359543No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12490.23539966113003147No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACA12450.23464577910879839No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11740.22126437323191106No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11230.2116523774611892No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10370.19544391400467787No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9120.17188510084114386No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9050.17056580730398596No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8980.16924651376682806No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8380.15793828344833175No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8130.15322652081562496No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTG8020.15115334525723395No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7630.1438029955502114No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7350.13852582140157976No Hit
GCAGACTGCCTGCACGAAAAATACGGTGGCC7210.13588723432726396No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7140.13456794079010606No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7060.1330601767476399No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7030.13249476523171505No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6930.13061006017863233No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6350.11967877087075257No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6310.11892488884951949No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6310.11892488884951949No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6290.11854794783890295No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6220.11722865430174505No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6220.11722865430174505No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5350.1008317203399254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)