FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548342
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25060.4570140532733222No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG20380.37166585816880704No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTC18030.328809392678292No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16940.30893128740822334No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16750.3054662965813306No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16370.29853631492754523No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16360.2983539469892877No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15430.2813937287313392No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC15310.2792053134722491No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13780.2513030189188499No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG13630.24856749984498724No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACA13130.2394491029321117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12910.23543700829044648No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12200.2224888846741632No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11510.20990549693439498No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG11330.2066228740457598No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10250.1869271367139486No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9550.17416138103592285No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9510.1734319092828928No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8660.15793063453100437No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8520.15537748339539922No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8420.15355380401282412No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTG8330.15191249256850653No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8100.14771802998858377No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7970.14534724679123615No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG7750.14133515214957088No Hit
GCAGACTGCCTGCACGAAAAATACGGTGGCC7720.14078804833479835No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7700.14042331245828335No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7680.14005857658176832No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7420.13531701018707304No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7250.13221675523669535No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6740.12291599038556231No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6730.12273362244730479No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6720.12255125450904727No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6710.12236888657078976No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6140.11197391409011165No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5950.10850892326321894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)