FastQCFastQC Report
Sun 21 May 2023
EGAF00007926378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504521
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG55261.0952963305789054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT46210.9159182670295191No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41390.820382105006531No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA32150.6372380931616325No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG20170.3997851427393508No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA19030.37718945296627887No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC17370.3442869573318058No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT15230.3018704870560393No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG13900.2755088489874554No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT11580.2295246382212039No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11380.22556048212066496No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC11230.22258736504526072No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA10120.2005862986872697No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9180.18195476501473676No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT8820.17481928403376668No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG8270.16391785475728463No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.15103434743053312No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7560.14984510060037146No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG7290.1444934898646439No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7260.14389886644956307No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA7090.14052933376410495No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA6660.13200639814794626No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG6610.13101535912281154No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC6260.12407808594686841No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6110.12110496887146423No Hit
AACCTGACCGCGGAACTGGATAAAGTTAAAG6090.12070855326141033No Hit
ATGGGTGTTGACATGGTCGAAATCGACCTGA6040.1197175142362756No Hit
AAACTGGCAGGCAAATACACTACCGAGGACG5860.11614977374579055No Hit
CAGATCGTGATCAAAATTACCGATCAGGGTT5820.11535694252568277No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5750.11396948789049416No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG5740.1137712800854672No Hit
GTATATAGCAACGTTGAAGTCACCAACGGCA5690.11278024106033248No Hit
GAAGTTCACACCATGGTTGTACAGCACAACA5350.1060411756894163No Hit
GGTGTTCCGGCGTCTACCTGGGCCGCAATCA5290.10485192885925462No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5130.10168060397882349No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5120.10148239617379654No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGA5110.1012841883687696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)