FastQCFastQC Report
Wed 31 May 2023
EGAF00007926379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530229
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG60861.1478059479960545No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT46920.8849006749913716No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT31480.5937057384639467No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT19700.3715375809320124No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA19010.35852433571155107No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT18940.3572041514138231No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG16390.3091117234251616No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA15260.2878001769046959No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT11860.22367693958648058No Hit
GTCAGTGCCGAAGGACTGACGCAGCTTGGTGCGAACCTGGTTTG11600.21877339790920525No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT11580.2183962023955687No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG8980.1693607856228158No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA8890.16766340581145128No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT8260.15578174713189963No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7500.1414483176137103No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC7450.14050532882961891No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7340.1384307535046178No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6820.12862367015006723No Hit
GCCTTGACGAGATGCGTCGGAAATCTGTTTTTCTTCTTTGACCT6710.12654909482506616No Hit
GATTTCGTTAACGATATCGCTGTCCTTCAGCTGATAGTTCGGGT6590.12428592174324679No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6580.12409732398642852No Hit
CAGGGTCGGAATCTGATGACGGGTTTTGCATGCAACACCGTTCT6560.12372012847279194No Hit
ATCCTTCATCAGCAGTTCTTCGGAAAACAGGGCATCATACGGCA6540.12334293295915538No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6480.1222113464182457No Hit
GGATGGCGGAGTCAGGCCTTTTTCCTTGGCGTAAGCCTGTGCCG6110.11523322941596932No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG6060.11429024063187793No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5910.11146127427960371No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT5840.11014108998187576No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5750.10844371017051124No Hit
GTTCAGGCCACGGATCTGACCGCGCATTTTTTCGCTAATGGACA5510.1039173640068725No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5450.10278577746596282No Hit
CACAGTCAGAGCAGTGGTAGATTCGAAGTCTTTAACATCCGCGG5320.10033400662732518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)