FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences608363
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26420.43428019126738476No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16320.26826089029082967No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15550.25560397328568635No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13710.22535887290975948No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC10950.17999122234586915No Hit
ATACGCGTAATCGGTGATACGGGAGTTCAGGATAGTCGGCTCAT6940.11407662859181113No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6570.1079947334075215No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6470.10635097795230809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)