FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494344
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43670.8833929409480037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17830.3606800122991277No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11590.23445212240868707No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8150.16486495234088003No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5340.10802194423316558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)