FastQCFastQC Report
Wed 31 May 2023
EGAF00007926385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520439
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10790.20732496988119645No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10720.20597995154091067No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8900.17100947469347993No Hit
GGTACGGTGAGTGGCACGGTCCTTCAGGTCGTAACGGGTGCTAG8250.1585200186765404No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7680.14756772647707034No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6310.12124379610290544No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6230.11970663228543595No Hit
CTGGATATCATCGTCGTCGAACAGGTCTTCGAAATCGTTAAAGA5550.10664073983694534No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5390.1035664122020064No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5280.10145281195298585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)