FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520439
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACCTACTACTGATTACGGCGGTGACT10740.20636424249527802No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10710.20578780606372696No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9420.18100103950703156No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8500.16332365560613252No Hit
CGTTCCTACGACGCCGATGACCGCCTGACCG8080.15525354556441773No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7390.14199550763874344No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6580.12643172398686492No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6530.12547099660094652No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6450.12393383278347701No Hit
GCCGTGGATGAGATGTTCCCGGAAGGTGCAG5560.10683288531412903No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.10548786697384324No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5460.10491143054229218No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5440.10452713958792481No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5230.10049208456706742No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5210.10010779361270006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)