FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499501
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42140.8436419546707614No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9990.1999995996004012No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9580.19179140782500936No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8640.17297262668142807No Hit
CGTTCCTACGACGCCGATGACCGCCTGACCG7820.1565562431306444No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7800.15615584353184478No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.1269266728194738No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6110.12232207743327841No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5790.11591568385248478No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5390.10790769187649274No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5340.10690669287949373No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5270.10550529428369512No Hit
GCCGTGGATGAGATGTTCCCGGAAGGTGCAG5020.10050029929870011No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5020.10050029929870011No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5000.10009989969990049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)