FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506528
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10980.21676985280181943No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10180.20097605660496556No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8270.16326836818497695No Hit
GGTACGGTGAGTGGCACGGTCCTTCAGGTCGTAACGGGTGCTAG7950.1569508497062354No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7810.15418693537178596No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5820.11489986733211194No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5440.10739781413860636No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5310.10483132225661759No Hit
CTGGATATCATCGTCGTCGAACAGGTCTTCGAAATCGTTAAAGA5150.10167256301724682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)