FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506528
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41010.8096294775412217No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10630.20986006696569587No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10160.20058121170004423No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8760.17294206835554995No Hit
CGTTCCTACGACGCCGATGACCGCCTGACCG7690.15181786594225788No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7460.1472771495356624No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6050.11944058373870743No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5850.11549213468949396No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5610.1107539958304378No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5360.10581843451892096No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.10463389980415692No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5150.10167256301724682No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5130.10127771811232547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)