FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549444
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT37980.6912442396313364No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT14300.26026310233617983No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11970.21785659685063444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10380.18891825190556272No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8650.15743187658796892No Hit
GTGACGACGAGCCAGTTCAGCGGCCTGGCGTTTCGCTTCTTCCG6710.12212345571159207No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6520.11866541449174074No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5560.10119320622301818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)