FastQCFastQC Report
Wed 31 May 2023
EGAF00007926392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549444
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG38440.699616339426766No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20050.3649143497790494No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG15050.27391326504611935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11570.21057651007200004No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9530.17344806750096461No Hit
ACCCGTCAGAAAGCAGAACAGGAGCGTAGCT7520.13686563143832675No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC7050.12831152947343133No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5900.10738127998485743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)