FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505390
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29610.5858841686618256No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18090.3579413917964344No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13870.2744415204099804No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13150.2601950968558935No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA12790.25307188507885No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12110.23961692949999008No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11990.23724252557430894No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8650.17115494964285008No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8280.16383387087199985No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7860.1555234571321158No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7260.14365143750370998No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6760.13375808781337184No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5940.11753299432121728No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.1157521913769564No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.11456498941411583No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5640.1115969845070144No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5610.1110033835255941No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5220.10328657076713033No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5220.10328657076713033No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5090.10071429984764241No Hit

[OK]Adapter Content

Adapter graph