FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484938
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42180.8698019128218453No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27830.5738877959656699No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17260.3559217879399016No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13030.2686941423439697No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA12950.2670444469189876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12810.26415747992526883No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11610.23941204855053633No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10630.21920327959450486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7390.1523906148827273No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7240.1492974359608857No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6510.1342439652079235No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6440.1328004817110641No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6130.1264079119392582No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6000.12372715687366222No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5540.11424140818001476No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5510.11362277239564646No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5160.10640535491134948No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4950.1020749044207713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)