FastQCFastQC Report
Sun 21 May 2023
EGAF00007926400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549104
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48800.888720533815088No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA48370.8808895946851598No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35130.6397695154287713No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG34710.6321206911623298No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26020.47386287479238903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22310.40629826043882394No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20200.36787202424313065No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19230.3502068824849209No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19210.3498426527579475No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13820.25168274133861707No Hit
GCCTTCGAAGCGGTTCTGCCGATGCTGGAAG13520.24621929543401613No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG12160.22145167399982515No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11710.21325650514292374No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11230.2045149916955622No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11110.20232961333372185No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10630.19358809988636033No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9830.17901891080742446No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9340.17009528249657624No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8820.16062530959526794No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8550.15570820828112705No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8260.15042687724001283No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8110.14769515428771235No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7930.1444170867449518No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7930.1444170867449518No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7660.1394999854308109No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7600.13840729624989073No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7530.13713249220548385No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7290.1327617354818031No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6930.12620560039628193No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6730.12256330312654798No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6620.12056003962819431No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6480.11801043153938053No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6260.11400390454267316No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6040.10999737754596578No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5760.10489816136833824No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5660.10307701273347125No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5610.10216643841603776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)