FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546032
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT33510.6137002959533507No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26070.47744454537463005No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26070.47744454537463005No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24590.450339906818648No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21710.3975957453043045No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21280.3897207489670935No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20920.38312772877780055No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19070.34924693058282297No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18060.33074984616286224No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14480.26518592316933803No Hit
ACGACGGGAGGAGCGAGAGTTCACAGACGGACGACGACCTGGGC13590.24888651214580831No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12670.2320376827731708No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12140.22233129193893397No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11030.20200281302194742No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10680.19559293228235708No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9700.1776452662115041No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9470.1734330588683447No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9130.16720631757845694No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8600.15749992674422011No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8260.15127318545433235No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8250.15109004600462977No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7810.14303191021771616No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7160.13112784598704838No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7030.12874703314091482No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6810.12471796524745801No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6790.12435168634805287No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6580.12050575790429865No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6490.11885750285697541No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6250.11446215606411346No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6130.11226448266768248No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6080.11134878541916957No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5850.10713657807601018No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5830.10677029917660504No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5770.10567146247838954No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5740.1051220441292818No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5740.1051220441292818No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5730.10493890467957923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)