FastQCFastQC Report
Wed 31 May 2023
EGAF00007926402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546032
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48590.8898745861048437No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA48130.881450171418525No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG34170.625787499633721No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34090.6243223840361005No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26120.47836024262314303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21030.38514226272452895No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20900.38276144987839544No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19910.3646306443578398No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18880.34576728103847393No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13530.24778767544759284No Hit
GCCTTCGAAGCGGTTCTGCCGATGCTGGAAG13490.2470551176487825No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG12130.2221481524892314No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12090.22141559469042107No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12060.22086617634131334No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11410.20896211211064555No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10520.19266270108711578No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10070.18442142585049962No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9590.17563073226477569No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9390.17196794327072407No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8610.1576830661939227No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8390.1536539983004659No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7990.14632842031236265No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7970.14596214141295746No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7480.13698830837753098No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7280.13332551938347934No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7270.13314237993377678No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7200.1318604037858587No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7100.1300290092888329No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7060.12929645149002258No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6680.12233715240132446No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6600.1208720368037038No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6490.11885750285697541No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6380.11684296891024701No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6080.11134878541916957No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6040.11061622762035925No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5710.10457262578017405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)