FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532668
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51000.9574444119038501No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA45960.8628263759039402No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43570.817957902483348No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32520.6105116132375138No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG32020.6011249033168878No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25600.4805995479360502No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20110.37753347300757695No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19410.3643920791187006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18360.34467998828538604No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18300.3435535830949109No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13100.24593179992040068No Hit
GCCTTCGAAGCGGTTCTGCCGATGCTGGAAG12790.24011203976961262No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11760.22077541733312306No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11340.21289058099979724No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11050.20744628924583416No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10370.19468036375378284No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10370.19468036375378284No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9370.1759069439125309No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8710.1635164868173046No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8370.15713352407127892No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8220.15431751109509115No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8150.15300337170620348No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7500.14080064880938972No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7470.14023744621415216No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7400.13892330682526452No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7340.1377969016347894No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7210.13535635705542665No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7060.13254034407923884No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6590.12371683675385042No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6550.12296589996020034No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6510.12221496316655027No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6300.11827254499988736No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5940.11151411385703666No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5520.10362927752371083No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5400.10137646714276059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)