FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483830
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41250.8525721844449496No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14570.3011388297542525No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14060.29059793729202404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13050.26972283653349316No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12560.2595953124031168No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12140.25091457743422274No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12010.24822768327718414No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG10610.21929190004753735No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9260.19138953764752084No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8130.16803422689787736No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7940.16410722774528244No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7530.15563317694231446No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6570.1357914970134138No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6430.13289791869044915No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6410.13248455035859702No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6410.13248455035859702No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6310.13041770869933655No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6310.13041770869933655No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6250.12917760370378026No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6190.12793749870822396No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6050.1250439203852593No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5580.115329764586735No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5510.11388297542525268No Hit
GCTAGCCGTGAACATTTCGCGATGCAGGGTC5400.11160944960006614No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5310.1097492921067317No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5020.10375545129487632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)