FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509514
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG15530.30480026064053195No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13870.27222019414579385No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13840.2716313977633588No Hit
CGGCGGCAGCGGCAGGCCTGCGCGGTTGGTCAGGCTACCGCTGA11050.21687333419690139No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9780.1919476206738186No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9540.18723724961433838No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9420.18488206408459826No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8650.16976962360209924No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7670.15053560844255506No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7490.1470028301479449No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7290.1430775209317114No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7230.14189992816684135No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7210.141507397245218No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6990.13718955710736114No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6900.13542316796005605No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6700.13149785874382255No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6690.1313015932830109No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6580.12914267321408243No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6310.1238435057721672No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6280.12325470938973218No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6180.12129205478161541No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5890.11560035641807684No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5820.11422649819239511No Hit
ACGGCTGAAGCACAGCTGGCAGCCGATGTGGTGCATTTTCAGAC5820.11422649819239511No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5640.11069371989778495No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5370.10539455245586972No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5330.10460949061262301No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5220.10245057054369458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)