FastQCFastQC Report
Sun 21 May 2023
EGAF00007926410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509514
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACCTACTACTGATTACGGCGGTGACT15350.30126748234592177No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15230.2989122968161817No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13850.27182766322417046No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13410.2631919829484568No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12080.23708867666050396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12040.2363036148172572No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG11010.21608827235365466No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9900.1943028062035587No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9480.18605965684946832No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9430.18507832954540995No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9140.17938663118187134No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8860.17389119827914445No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7630.14975054659930837No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7490.1470028301479449No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7300.14327378639252308No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7010.13758208802898447No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6890.13522690249924438No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6850.13444184065599768No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6830.13404930973437432No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6780.13306798243031595No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6450.12659122222353067No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6280.12325470938973218No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6180.12129205478161541No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6060.11893686925187531No Hit
GCTAGCCGTGAACATTTCGCGATGCAGGGTC6000.11775927648700527No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5770.11324517088833672No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5480.10755347252479815No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5250.1030393669261296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)