FastQCFastQC Report
Wed 31 May 2023
EGAF00007926412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504314
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42160.8359871032729609No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27090.5371653374683233No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21240.4211661782143664No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20830.4130363226085336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19390.3844826834075596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17670.3503769476952851No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15160.30060636825469844No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14710.29168335600439405No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14130.28018258465955737No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13530.26828523499248486No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13330.26431945177012733No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12560.24905118636405096No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12020.23834357166368572No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11590.2298171377356171No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11140.22089412548531273No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10770.21355742652395135No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10660.2113762457516547No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10180.20185836601799673No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC9250.18341747403403436No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.1695372327557831No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8340.16537316037230773No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8330.16517487121118984No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8320.16497658205007198No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8290.16438171456671835No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8250.16358855792224686No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8190.1623988229555396No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG8130.16120908798883235No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8090.16041593134436086No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7870.1560535697997676No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7810.15486383483306035No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7750.1536740998663531No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7630.1512946299329386No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6530.12948282220997237No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6470.1282930872432651No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6290.12472388234314336No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5900.11699060505954624No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5770.11441284596501386No Hit
CGTGATCTGGAAGCGGTACGCCAGGCCAAAA5680.11262824351495299No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5640.11183508687048148No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5600.11104193022600999No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5520.10945561693706699No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA5410.10727443616477036No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5220.10350694210353073No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5200.10311036378129498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)