FastQCFastQC Report
Sun 21 May 2023
EGAF00007926417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513719
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21050.4097570850990522No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18460.3593404176213066No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8200.15962033718822938No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8050.1567004529713715No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5560.10823037497153112No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5350.10414253706793014No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5140.10005469916432913No Hit
GGTCAGGGTGCTCTGGTAAGTGCCATCAGCCACAACTACGTTTT5140.10005469916432913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)