FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences601682
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23400.3889097563164595No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22200.3689656662489488No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21400.3556696062039416No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18840.3131222140599187No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17950.2983303472598482No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17740.29484013149803384No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15180.2522927393540109No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14990.24913492509332172No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13960.23201624778537497No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12720.21140735471561392No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12490.20758473745267433No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11040.18348562862109885No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10990.1826546248682859No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10620.1765051970974701No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10010.16636695131315213No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9600.15955272054008596No Hit
ACCCTGGCGATGGACGTGACGACGGTGCGGGTCGCCAGCTTTAC8810.14642286124564138No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8390.13944242972201262No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7920.13163099444557091No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7410.12315475616687885No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6480.10769808636455801No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6440.10703328336230766No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6410.1065346811106199No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6350.10553747660724436No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6190.10287826459824292No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6130.10188106009486739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)