FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences601682
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46030.7650220548395996No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC23790.3953915855884005No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG22130.3678022609950106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20190.33555931538586825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19340.32143225158804817No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19190.3189392403296093No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18410.30597558178572737No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17810.296003536751972No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG17430.2896879082305936No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16040.2665860039023936No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13520.22470341476062106No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12570.20891434345717505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12310.20459312394254772No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10030.1666993528142773No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9760.1622119325490874No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9710.16138092879627444No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9640.16021752354233632No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9230.15340329276927014No Hit
GCCGGTTCCCAGGAAGCGGAACTGTCTCGTG8600.142932645483827No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7710.12814077868375653No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7380.12265615391519108No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7270.12082794565900261No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7180.11933213890393929No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6790.1128503096319983No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6650.11052349912412204No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6550.10886149161849616No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6530.10852909011737097No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6130.10188106009486739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)