FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553249
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14760.2667876489609561No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11450.20695925342838398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11370.2055132499109804No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.16357914790627728No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8070.14586560481808372No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC7960.14387734998165383No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7730.1397200898691186No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7670.13863558723106595No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7590.13718958371366238No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7160.12941731480761826No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7000.12652530777281115No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6880.12435630249670582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6470.11694553447001259No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6210.11224602303845103No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5890.10646200896883681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)