FastQCFastQC Report
Sun 21 May 2023
EGAF00007926423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527655
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11000.20846954923197922No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC8260.15654167969601349No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7790.14763434441064713No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7490.14194881124977493No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7350.13929556244136793No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6390.12110185632657702No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6180.11712198311396652No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6140.11636391202585024No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5600.10612995233628034No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5510.10442429238801869No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5330.10101297249149538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)