FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527655
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42330.802228728999062No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13750.260586936539974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11580.2194615800096654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10900.2065743715116885No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC8030.15218277093934485No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7530.14270688233789125No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7470.1415697757057168No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7260.1375899024931063No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7100.13455761814064113No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6510.12337606959092588No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6420.12167040964266423No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6250.11844860751817No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6040.11446873430555951No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5670.10745657674048384No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5590.10594043456425126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)