FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552161
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11630.21062697292999685No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC8620.15611388707279217No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7630.13818433391710028No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7360.13329445578372973No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7300.1322078161985363No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT7030.12731793806516578No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7000.12677461827256903No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6570.11898703457868266No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5820.10540403976376454No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5760.1043174001785711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)