FastQCFastQC Report
Wed 31 May 2023
EGAF00007926426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552161
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14770.26749444455512067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11570.2095403333448034No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10990.1990361506879334No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10200.18472872948288632No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC8390.1519484353295506No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7820.14162535927021286No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7660.138727653709697No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7360.13329445578372973No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7240.13112117661334285No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7120.12894789744295596No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6920.12532576549231111No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6690.12116031374906956No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5950.1077584255316837No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5820.10540403976376454No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5800.10504182656870006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)