FastQCFastQC Report
Sun 21 May 2023
EGAF00007926428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515988
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42390.8215307332728667No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16500.31977487848554614No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16080.3116351543059141No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14820.28721598176701785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11250.21802832624014512No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9340.18101196151848492No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9270.1796553408218796No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8890.1722908284688791No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7730.14980968549656193No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG7480.14496461158011428No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7140.13837531105374543No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6540.126747133654271No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6310.12228966565113918No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT5860.11356853260153336No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5860.11356853260153336No Hit
TACGACGGCAGCGCCATTAAAGAAGTACAGT5630.10911106459840152No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5360.10387838476863802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5260.10194035520205898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)