FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540767
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16020.29624588778531236No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12070.22320148973587517No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9380.17345733005157488No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9070.16772473172364438No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8920.16495089382303282No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8380.15496507738083132No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC8110.14997216915973052No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7680.14202050051131077No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7590.14035619777094385No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7520.1390617400839918No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7270.1344386769163059No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6960.1287060785883754No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6510.12038456488654078No Hit
GATAACAGACTCATCGGAGCTGGTAAAAGTAACCGTCTTGTCAG5600.10355661495616413No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT5560.10281692484933437No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5490.10152246716238233No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5420.10022800947543026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)