FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540767
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17030.3149230629827634No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16570.3064166267542213No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16370.3027181762200726No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12120.22412610236941236No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10000.18492252670743592No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9760.18048438606645745No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9690.1791899283795054No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9530.17623116795218643No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7940.14682848620570413No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG7870.14553402851875205No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7840.14497926093862976No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7450.13776728239703978No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7040.1301854588020349No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6330.11705595940580693No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5870.10854952317726489No Hit
TACGACGGCAGCGCCATTAAAGAAGTACAGT5780.10688522043689795No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT5740.10614553033006821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)