FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523495
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14640.2796588315074643No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11910.22750933628783465No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8950.17096629385189926No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8770.16752786559565994No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8630.1648535325074738No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7920.15129084327452985No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC7750.14804343881030382No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7400.14135760608983847No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7090.13543586853742634No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7050.13467177336937314No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6820.13027822615306736No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6510.12435648860065522No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6450.12321034584857543No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT5930.11327710866388409No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5310.10143363355905978No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5310.10143363355905978No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5280.10086056218301989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)