FastQCFastQC Report
Wed 31 May 2023
EGAF00007926432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523495
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42230.8066934736721459No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16980.32435839883857537No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16540.31595335198999036No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15030.28710875939598274No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11390.2175760991031433No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9840.18796741134108252No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9100.1738316507320987No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9010.172112436603979No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7680.14670627226621075No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7630.14575115330614427No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG7430.14193067746587837No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6600.12607570272877486No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6490.12397444101662862No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT6210.11862577484025635No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5910.1128950610798575No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5800.11079379936771123No Hit
TACGACGGCAGCGCCATTAAAGAAGTACAGT5280.10086056218301989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)